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1. SpecHLA SpecHLA Public

   SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

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2. GCNFrame GCNFrame Public

   This is a python package for genomics study with a GCN framework.

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3. SpecImmune SpecImmune Public

   Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBi…

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4. DeepHost DeepHost Public

   This is the repository for DeepHost, a phage host prediction tool.

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5. LocalHGT LocalHGT Public

   Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

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6. SpecHap SpecHap Public

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