PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.

paleobuddy: an R package for simulating diversification dynamics, fossil records and phylogenies in R.

Open Software for Teaching Evolutionary Biology at Multiple Scales Through Virtual Inquiries

Bayesian inference of trait evolution under a “fossilized” Brownian motion.

A Julia interface to the Paleobiology Database (PBDB) data service.

Data and analyses used in Moon & Stubbs, Communications Biology doi:10.1038/s42003-020-0779-6

Data and code for "The Cultural Macroevolution of Arcade Video Games: Innovation, Collaboration, and Collapse"

Paper - A novel function of banded stripes to prevent cannibalism in snake-eating snakes

Galapagos Islands Testudinidae Macroevolution (GITM)

Infer phylogeny parameters with Deep Learning.

Data, code & figures used to assess global patterns of potential thermal niche filling

Analysing patterns of phenotypic adaptation across timescales and lineages

Supplementary code and data for "The paradox of predictability"

This repository contains the R code, data, and figures for the paper Vidal-García, M., O'Hanlon, J.C., Svenson, G.J, Umbers, K.D.L. (in press) The evolution of defensive displays in praying mantises. Proceedings of the Royal Society B

Macroevolutionary analyses of the Monodoreae tribe (Annonaceae) 🧬🌳🌍

Paper - Best practices for building and curating databases for comparative analyses

R codes for simulating and detecting punctuated evolution in any clades, from dinosaurs to viruses

R scripts to explore global patterns of diversificatio and species richness of current and present-natural mammals

Analogy between the protracted birth death model and the classical birth death model

Code and data to reproduce all analyses and figures in Hill et al 2023